STRINGSTRING
RB1439 RB1439 RB1432 RB1432 RB1436 RB1436 RB1442 RB1442 RB1427 RB1427 RB1430 RB1430 RB1431 RB1431 RB1433 RB1433 RB1434 RB1434 ndhF ndhF ndhF-2 ndhF-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Experiments
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[Homology]
Score
RB1439Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:F82494; conserved hypothetical protein VCA0153 [imported] -; E=5e-05 gb:AAF21817.1; AF097740_6 (AF097740) multiple resistance and pH; E=7e-04 ddbj:BAB05033.1; (AP001511) Na+H+ antiporter [Bacillus; E=0.004 COG: VCA0153; COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit; E=4e-06. (142 aa)    
Predicted Functional Partners:
RB1432
Conserved hypothetical protein-putative multisubunit Na+/H+ antiporter; PMID: 11016950 best DB hits: BLAST: gb:AAG19081.1; (AE005007) Vng0565c [Halobacterium sp. NRC-1]; E=5e-11 pir:H71683; hypothetical protein RP285 - Rickettsia prowazekii; E=9e-09 pir:E75113; long hypothetical protein PAB0488 - Pyrococcus abyssi; E=5e-07 COG: VNG0565C; COG1006 Multisubunit Na+/H+ antiporter; E=4e-12 PFAM: PF01898; Protein of unknown function DUF67; E=1.9e-11.
 
 
 0.999
RB1436
Conserved hypothetical protein; PMID: 9679194 PMID: 11016950 best DB hits: BLAST: swissprot:O58672; Y944_PYRHO HYPOTHETICAL PROTEIN PH0944 -----; E=0.052 pir:C75465; conserved hypothetical protein - Deinococcus radiodurans; E=0.13 pir:F75101; hypothetical protein PAB0803 - Pyrococcus abyssi; E=0.67 COG: PH0944; COG1320 Multisubunit Na+/H+ antiporter; E=0.005.
 
 
 0.999
RB1442
Conserved hypothetical protein-putative Na+/H+ antiporter; PMID: 10360571 best DB hits: BLAST: pir:C72280; conserved hypothetical protein - Thermotoga maritima; E=8e-09 pir:A71726; hypothetical protein RP156 - Rickettsia prowazekii; E=3e-08 pir:A75113; hypothetical protein PAB0485 - Pyrococcus abyssi (strain; E=8e-08 COG: TM1205; COG1863 Multisubunit Na+/H+ antiporter; E=8e-10 PFAM: PF01899; Protein of unknown function DUF68; E=1.9e-09.
 
 
 0.999
RB1427
PMID: 1470679 best DB hits: BLAST: embl:CAC14149.1; (AJ245399) putative NADH-ubiquinone; E=9e-90 gb:AAG19078.1; (AE005006) Vng0560c [Halobacterium sp. NRC-1]; E=2e-47 ddbj:BAB05035.1; (AP001511) Na+H+ antiporter [Bacillus; E=3e-26 COG: VNG0560C; COG0651 Formate hydrogenlyase subunit 3; E=2e-48 BH1319_1; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-21 PH1452; COG0651 Formate hydrogenlyase subunit 3; E=6e-21 PFAM: PF00361; NADH-Ubiquinone/plastoquinone (co; E=1.4e-36.
 
 
 0.997
RB1430
PMID: 1470679 best DB hits: BLAST: embl:CAC14148.1; (AJ245399) putative NADH-ubiquinone; E=4e-80 gb:AAG19079.1; (AE005006) Vng0562c [Halobacterium sp. NRC-1]; E=4e-57 pir:F71683; NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain L2; E=7e-31 COG: VNG0562C; COG0651 Formate hydrogenlyase subunit 3; E=3e-58 RP283; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=7e-32 BH1316; COG0651 Formate hydrogenlyase subunit 3; E=2e-22 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.69 PF00361; NADH-Ubiquinone/plastoquinone (; E=2.6e-49.
 
 
 0.997
RB1431
PMID: 11016950 best DB hits: BLAST: pir:F75113; NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi; E=7e-44 gb:AAG19080.1; (AE005007) NADH dehydrogenaseoxidoreductase; E=4e-42 ddbj:BAB05035.1; (AP001511) Na+H+ antiporter [Bacillus; E=1e-41 COG: PAB2416; COG0651 Formate hydrogenlyase subunit 3; E=6e-45 Rv3158; COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N); E=6e-30 RP284; COG0651 Formate hydrogenlyase subunit 3; E=4e-29 PFAM: PF00361; NADH-Ubiquinone/plastoquinone (; E=3.2e-58.
 
 
 0.997
RB1433
Conserved hypothetical protein; PMID: 9823893 best DB hits: BLAST: pir:G71681; hypothetical protein RP267 - Rickettsia prowazekii; E=1e-19 gb:AAG19082.1; (AE005007) Vng0564h [Halobacterium sp. NRC-1]; E=3e-09 pir:S61393; hypothetical protein 2 - Bacillus sp. (strain C-125); E=1e-05 COG: RP267_2; COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; E=6e-20.
 
 
 0.994
RB1434
Conserved hypothetical protein; PMID: 9823893 best DB hits: BLAST: pir:G71681; hypothetical protein RP267 - Rickettsia prowazekii; E=2e-22 gb:AAG19083.1; (AE005007) Vng0566c [Halobacterium sp. NRC-1]; E=6e-15 pir:G72280; conserved hypothetical protein - Thermotoga maritima; E=0.001 COG: VNG0566C; COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; E=6e-16 RP267_1; COG1563 Uncharacterized ACR; E=8e-04 PA1054_2; COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit; E=0.001.
 
 
 0.994
ndhF
NADH subunit 5; PMID: 3035337 best DB hits: BLAST: gb:AAG09461.1; AF217811_11 (AF217811) NADH subunit 5 [Tupaia; E=3e-29 swissprot:P50368; NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN; E=4e-29 embl:CAA50887.1; (X72004) NADH-ubiquinone oxidoreductase subunit; E=1e-28 COG: slr0844; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=3e-29 PAB1402; COG0651 Formate hydrogenlyase subunit 3; E=4e-17 sll1732; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-16 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.41 PF00361; NADH-Ubiquinone/plastoquinone (; E=1.2e-36.
  
 
 0.905
ndhF-2
Best DB hits: BLAST: pir:G82182; probable NADH dehydrogenase VC1581 [imported] - Vibrio; E=2e-42 gb:AAF27211.1; AF111731_1 (AF111731) NADH dehydrogenase [Ceiba; E=2e-39 gb:AAF27226.1; AF111746_1 (AF111746) NADH dehydrogenase; E=3e-39 COG: VC1581; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L); E=1e-43 BS_shaA_1; COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain; E=1e-25 PFAM: PF00662; NADH-Ubiquinone oxidoreductase; E=0.0058 PF00361; NADH-Ubiquinone/plastoquinone; E=5.6e-38.
  
 
 0.905
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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